Not necessarily, because for that comparison to work you would need a proper NTFS driver. Does one such even exist for Linux? Looking at the Debian wiki [1] there's either a FUSE driver or a limited feature set kernel driver. Neither looks like a proper optimized "enterprise ready" driver. These work fine for accessing some files, but comparing these in a benchmark would no doubt show their weakness.
Now even if NTFS is inherently a slower architecture than ext4 or something, that does not change the fact that this difference would be minimal compared to the absolute horror show that is the Windows Defender slowdown.